PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0670.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 493aa    MW: 54379.2 Da    PI: 6.0399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12317362454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  SapurV1A.0003s0670.1.p 317 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 362
                             799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-5225209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.238313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-18314375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-14316366No hitNo description
PfamPF000107.2E-10317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16317375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-16319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEELIISPSS SSPLVSLSQE TPSTLHQRLQ LVVQNQPDWW SYAIFWRTLN DDSGRLFLGW  60
GDGHFQGSKD TSPKLNTVSN SRMTISNTER KRGMMKGIQS LIGECHDLDM SLMDGTDATD  120
SEWFYVMSLT RSFPPGDGIL GKAYTTGSLI WLTGGHELQF YNCERAKEAK MHGIETLVCI  180
PTSCGVLELG SSCAIRENWG LVQQAKSLFG SDLNAFLVPK GPSNPSEEPT QFLERNISFA  240
DIGIVAGLQE DGASDRGQKS AHETEAAKKH GANKAGQSYL SSEHSDSDFP LLAMHVEKRV  300
PKKRGRKPVL GRDAPLNHVE AERQRREKLN HRFYALRAVV PNVSRMDKAS LLSDAVSYIN  360
ELKAKVDELE SQLERDSESK KVKLEVADNT DNQSTTTSVD QSACRPNSSP GGAAHEVEVK  420
FVGSDAMIRV QSENVNYPAS RLMCALRELE FQVHHASMSC VNELMLQDVV VRVPDGLRAE  480
EALKSALLGR LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-30192093192Transcription factor MYC3
4rqw_B7e-30192093192Transcription factor MYC3
4rs9_A7e-30192093192Transcription factor MYC3
4yz6_A7e-30192093192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469390.0EF146939.1 Populus trichocarpa clone WS01225_C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301432.10.0basic helix-loop-helix family protein
TrEMBLB9GR680.0B9GR68_POPTR; Basic helix-loop-helix family protein
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-83bHLH family protein